PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G06200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 293aa    MW: 33098.5 Da    PI: 9.0158
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G06200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.4e-3169119151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  OPUNC05G06200.1  69 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 119
                      79***********************************************95 PP

2K-box102.45.9e-341372334100
            K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      s+ + ++e +a+++qqe+akLk +i nLq+++R l+G++++++++++L+qLe +L+k+l kiR++Knell+++ie++q++e elq++n++L++k
  OPUNC05G06200.1 137 SNASTVSEINAQHYQQEAAKLKLQITNLQNSNRTLVGDNITTMNHRDLKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKTK 230
                      3444499*************************************************************************************** PP

            K-box  98 lee 100
                      ++e
  OPUNC05G06200.1 231 VAE 233
                      986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-4061120IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.5961121IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-336383IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-3363134IPR002100Transcription factor, MADS-box
CDDcd002655.68E-4563135No hitNo description
PROSITE patternPS00350063117IPR002100Transcription factor, MADS-box
PfamPF003191.2E-2670117IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-338398IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-3398119IPR002100Transcription factor, MADS-box
PfamPF014862.9E-25144231IPR002487Transcription factor, K-box
PROSITE profilePS5129714.289147237IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGQGLCRPHM GRAIQIEELA NMHIYKEQEA EPSTGLMMPE PAPAASGGSG GSGSVGAEKI  60
GSRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN  120
SVKETIERYK KANSDTSNAS TVSEINAQHY QQEAAKLKLQ ITNLQNSNRT LVGDNITTMN  180
HRDLKQLEGR LDKGLGKIRA RKNELLCAEI EYMQRRETEL QNDNMYLKTK VAESERGLQT  240
VNMMGSASTS EYVQNMIHYD PRNFLQFNIM QQPQYYPEQE DRKAFMSGLA LSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A2e-1963133272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B2e-1963133272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C2e-1963133272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D2e-1963133272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3kov_A2e-1963148290Myocyte-specific enhancer factor 2A
3kov_B2e-1963148290Myocyte-specific enhancer factor 2A
3kov_I2e-1963148290Myocyte-specific enhancer factor 2A
3kov_J2e-1963148290Myocyte-specific enhancer factor 2A
3p57_A2e-1963148290Myocyte-specific enhancer factor 2A
3p57_B2e-1963148290Myocyte-specific enhancer factor 2A
3p57_C2e-1963148290Myocyte-specific enhancer factor 2A
3p57_D2e-1963148290Myocyte-specific enhancer factor 2A
3p57_I2e-1963148290Myocyte-specific enhancer factor 2A
3p57_J2e-1963148290Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2321570.0AB232157.1 Oryza sativa Japonica Group mRNA for transcription factor OsMADS58, complete cds.
GenBankFJ7509420.0FJ750942.1 Oryza sativa clone KCS268A08 MADS-box transcription factor 58 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638060.10.0PREDICTED: MADS-box transcription factor 58
SwissprotQ2V0P10.0MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBLA0A0E0KZM30.0A0A0E0KZM3_ORYPU; Uncharacterized protein
STRINGLOC_Os05g11414.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.17e-93MIKC_MADS family protein